Gene Search
DangshansuliV1.0 | Pbr000020.1
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| Gene id | Pbr000020.1 |
|---|---|
| Type | gene |
| Location | Chr5:28254742-28256153(+) |
| Length | 1412bp |
| Cultivar | DangshansuliV1.0 |
| Species | Pyrusxbretschneideri |
The following sequences are available for this feature:
ATGAGCTTGTAATTAATTGAGTTACTTTTATTATTACTAATTAGTTTTACGATGAAAACTCAATTTTTTTCATTTGAAAAAGATATTGCTGATCTGTCCTCTTAGGCTCGTAGCTAGAGAAGAGAAGACAGTTTACAAGTGGCAACCATCTTACATGCAATCTGTGACTCCATACCGAACAAGTGGCCTCCATGCATGCATATACATATACGATCACACATCCCCCGGCCCCACTCCACTTCACTCTCCATCCGTCCGCCTTAGACTTCTTGTCTCTGCCTGTATTCCACAATATTATTCTAATTTCCCATGAGTTTTAATTATTCTTATATCGATTCAGGAAAGACAAAACCCTAGTTATATATAATACTGAAATACGTCATTCCTTCTCCTTAATTTGCCTTCCAAAAAGAAACGTACGTACCGCGGGAACTAAATAGTCAAATTTCTATAGGTTTTATTTGTTTTTAGACATTTTGTTTTTCATTTTCTGTCTGTACATTCATGGCCTTTTGTACAAATGAAAATAATATTAATGAACCAAAACAAACATAAACGTACTGCAAGTATTATCCATTTTCACGATCATTCGTACACTCATATATTAATTGAGAGTCCATGCAGTGCTGAAACTATCAGATATCAACCTGAGGCAGGCTGAGATGAACCAATACAGCATGGGGATGGGGAGACAGACTACGGCCACCACCAACGTTAACAATGTTTTCAACAACAACAACGTTAACCACCCCTCCAATGCCAATACCACTAATGGCACTGCCGATGATAACGAGTGCATGGTGCGAGAGCAAGACCGTTTTATGCCGATAGCCAATGTGATAAGAATCATGCGCAAGATCCTTCCCCCACATGCCAAGATCTCTGACGACGCCAAGGAAACCATCCAAGAGTGCGTCTCCGAGTACATCAGCTTCATCACCGGGGAGGCCAACGAGCGCTGCCAGCGTGAGCAGCGGAAGACCATCACTGCTGAAGACGTGCTGTGGGCCATGAGCAAGCTCGGCTTTGATGACTACATCGAGCCACTCACCCTCTACCTGCACCGCTACCGCGAGATGGAGGGCGAGCGTGGGTCCTCCACCACCTCTTTGATGAGAAGCGAGTCCTTGGCCAAGGGGGCGGGTGCTAGTAGTGGTACCAGCAGCAGGTCAATGGATCACCCCCAGTACTATGGCACCTCTATGGCGGCTGCTTTTCATCATCAGCATGGCCATGGCCTTTTTGGTTACATGCAGCCGTCCGATGTGTCCGTCTCCAACAATAATGCGAATGCTGCAGCAGCATCTGGATCGTCCACCCAGCTCCAGGGTGGTGGTTCTGCCGCAATGCCAAATGGTGATCACCATCAGCCACATGCAAATGGTGCAAATGGTCCAAGTGGTGGAGTGTGA
ATGAGCTTGTAATTAATTGAGTTACTTTTATTATTACTAATTAGTTTTACGATGAAAACTCAATTTTTTTCATTTGAAAAAGATATTGCTGATCTGTCCTCTTAGGCTCGTAGCTAGAGAAGAGAAGACAGTTTACAAGTGGCAACCATCTTACATGCAATCTGTGACTCCATACCGAACAAGTGGCCTCCATGCATGCATATACATATACGATCACACATCCCCCGGCCCCACTCCACTTCACTCTCCATCCGTCCGCCTTAGACTTCTTGTCTCTGCCTGTATTCCACAATATTATTCTAATTTCCCATGAGTTTTAATTATTCTTATATCGATTCAGGAAAGACAAAACCCTAGTTATATATAATACTGAAATACGTCATTCCTTCTCCTTAATTTGCCTTCCAAAAAGAAACGTACGTACCGCGGGAACTAAATAGTCAAATTTCTATAGGTTTTATTTGTTTTTAGACATTTTGTTTTTCATTTTCTGTCTGTACATTCATGGCCTTTTGTACAAATGAAAATAATATTAATGAACCAAAACAAACATAAACGTACTGCAAGTATTATCCATTTTCACGATCATTCGTACACTCATATATTAATTGAGAGTCCATGCAGTGCTGAAACTATCAGATATCAACCTGAGGCAGGCTGAGATGAACCAATACAGCATGGGGATGGGGAGACAGACTACGGCCACCACCAACGTTAACAATGTTTTCAACAACAACAACGTTAACCACCCCTCCAATGCCAATACCACTAATGGCACTGCCGATGATAACGAGTGCATGGTGCGAGAGCAAGACCGTTTTATGCCGATAGCCAATGTGATAAGAATCATGCGCAAGATCCTTCCCCCACATGCCAAGATCTCTGACGACGCCAAGGAAACCATCCAAGAGTGCGTCTCCGAGTACATCAGCTTCATCACCGGGGAGGCCAACGAGCGCTGCCAGCGTGAGCAGCGGAAGACCATCACTGCTGAAGACGTGCTGTGGGCCATGAGCAAGCTCGGCTTTGATGACTACATCGAGCCACTCACCCTCTACCTGCACCGCTACCGCGAGATGGAGGGCGAGCGTGGGTCCTCCACCACCTCTTTGATGAGAAGCGAGTCCTTGGCCAAGGGGGCGGGTGCTAGTAGTGGTACCAGCAGCAGGTCAATGGATCACCCCCAGTACTATGGCACCTCTATGGCGGCTGCTTTTCATCATCAGCATGGCCATGGCCTTTTTGGTTACATGCAGCCGTCCGATGTGTCCGTCTCCAACAATAATGCGAATGCTGCAGCAGCATCTGGATCGTCCACCCAGCTCCAGGGTGGTGGTTCTGCCGCAATGCCAAATGGTGATCACCATCAGCCACATGCAAATGGTGCAAATGGTCCAAGTGGTGGAGTGTGA
ATGAGCTTGCTCGTAGCTAGAGAAGAGAAGACAGTTTACAAGTGGCAACCATCTTACATGCAATCTGTGACTCCATACCGAACAAGTGGCCTCCATGCATGCATATACATATACGATCACACATCCCCCGGCCCCACTCCACTTCACTCTCCATCCGTCCGCCTTAGACTTCTTGTCTCTGCCTTGCTGAAACTATCAGATATCAACCTGAGGCAGGCTGAGATGAACCAATACAGCATGGGGATGGGGAGACAGACTACGGCCACCACCAACGTTAACAATGTTTTCAACAACAACAACGTTAACCACCCCTCCAATGCCAATACCACTAATGGCACTGCCGATGATAACGAGTGCATGGTGCGAGAGCAAGACCGTTTTATGCCGATAGCCAATGTGATAAGAATCATGCGCAAGATCCTTCCCCCACATGCCAAGATCTCTGACGACGCCAAGGAAACCATCCAAGAGTGCGTCTCCGAGTACATCAGCTTCATCACCGGGGAGGCCAACGAGCGCTGCCAGCGTGAGCAGCGGAAGACCATCACTGCTGAAGACGTGCTGTGGGCCATGAGCAAGCTCGGCTTTGATGACTACATCGAGCCACTCACCCTCTACCTGCACCGCTACCGCGAGATGGAGGGCGAGCGTGGGTCCTCCACCACCTCTTTGATGAGAAGCGAGTCCTTGGCCAAGGGGGCGGGTGCTAGTAGTGGTACCAGCAGCAGGTCAATGGATCACCCCCAGTACTATGGCACCTCTATGGCGGCTGCTTTTCATCATCAGCATGGCCATGGCCTTTTTGGTTACATGCAGCCGTCCGATGTGTCCGTCTCCAACAATAATGCGAATGCTGCAGCAGCATCTGGATCGTCCACCCAGCTCCAGGGTGGTGGTTCTGCCGCAATGCCAAATGGTGATCACCATCAGCCACATGCAAATGGTGCAAATGGTCCAAGTGGTGGAGTGTGA
Promoter sequence (upstream 2000 bp)
CAGGGAGAAATGGGAAAACATCAACAAGTATTTCAGAAGGTGCATGGGACCAGACAGTAAGCGTTCGGCAAATGCCAAGCTTTGTCCATATTTTCATGAATTGGAGTTGCTCCACAAAAGCGGACTCGTAAGTTTCGGGAATGGCTTTAACCGCACAAGCAACCAGAATGAGGCCAAGATTGAAAAACAGGAGCAAAAGAGTGAAAAAAGGAGTGATGACGGTATTCAAACCTCTCCTGCTTTTGATAACGGGGATGCAAGTGAAGGCAAGTTTCACAGAGAGAGAGAGAGAGGGATGAGTTGAGATGAATGCTGGGGCTCCCCTGCTCTGCTCTTTGATGGATGGCTAATATTATACGATTAGTGGTTTGATTGATGTTTGGGTCGGTCATTTTCTTCTTGAGAATTATCTTACATCTCTCTGGTGAAGGTTAATTTTGTTGTATCTTGATTGAACTTTTTATATGCTATTGAGTATTGACAATTAACTTTCTACTGCGACTGTCTGAAGGGCATGCATTTCGCAGAGGCGTGGTGTTTGCTTTGCTAATCGAAAGAGGGAGACGAACATAATGGCAGCCACCAAAATAGACCCAATTCCTTGATCCATATTTTCTTCAAGTGTTTAATTATGATACCAACACTCGAATAGTGATGAATGTTGAGGAATGGTGGCGGTGCTGTCATTTGCCATGCTGGTGTGTATGTAATGTGCATGATGTTTGTCCGTGTAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAACCATGCCCTGCCTGACCAGAGTGTAAAGGAAATCGTCGCCTTGCCGGCCGTGGGGTTAAGAGTTAAGACGTACTCTTTCACGAAATTAAATTATTAAGTTCACTGTATATCTTTTCTTTAATAAATAAATCACATTATATATTTGAAGAACGGGTCCTGGACTGATGAACGTAAGCCCACAACTTTTTTACATTTGGGTCAAAAGAAAAAAATGAAAAGAAAGGCCCATGTAAGAATCACGCGATCCAGTTTCGACAGAGCGATCCGTCTCAAGTGTTGGACCATTTTACCGAACTCTAAAAATAAATAAATATAAATAAAATGAATACGCGGCGCTAGGATTGCCACGTGGATTATGTTTTAAAGCAGTATAAAGGTGGACCCTGGCCAAGTAATGGCTGGTTCAAACTTGACTCGAGTCTTCTCCTCTTTCAAAAACTGTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGACTGAGAGTGTGAGAGAAAGGCAGATCAGGGCAGGAAAATACAATGAAACGATCAGGAGGTTTCCATGGCTACCAAAAGACCGCGACCACCCCAAACACAACCTCTGCTTCTGGTAAAAACTATTCTTCCTTTTCCTACTATATATAGTTTCCCTATTCCCTTCCCTACGTATTATTTCACATTTCCTACAATATATCTACACACACACACACACACTCTCTTCTTTGACATATATGTGTGTGTGGCACTTTTTTTATATATCTATTGCATTGCATGTCGTTAGATGTATATATCTTGGTTAGTTTATAGCCTGTCGTTTGTCTGTCTCTTAAATCTATCTATAGGTGTACACTCTTATAAGGAAACACATGCATTTGTGTAGATCTTGCACCAATTTGATGATCATTTGTTTCACAAGTTAATTTTTAATTAGTTCTAATTCCATTTTAATACAGTTGAGAGGCTTCAGCTCTTTTTGTACTCATCCTTCGATATATCGCAGCTCCATTCTTGAAGATTTAATTATCATTTCATTCTGTTTTCAATTAATTGATCAGTGATCACACACAGACATCCTACCTGCTCCCTCTCTTCCAAAGTCGATCTATACATAGATCTGTTCAGATTCCTCGATATCTTGATATATATGATCACGATCTGATAATTATGCATTGTGGTTTAGAGTATTTATGAATCCCAACTTTGAGAAAGAATGAACAATAT
MSLLVAREEKTVYKWQPSYMQSVTPYRTSGLHACIYIYDHTSPGPTPLHSPSVRLRLLVSALLKLSDINLRQAEMNQYSMGMGRQTTATTNVNNVFNNNNVNHPSNANTTNGTADDNECMVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYREMEGERGSSTTSLMRSESLAKGAGASSGTSSRSMDHPQYYGTSMAAAFHHQHGHGLFGYMQPSDVSVSNNNANAAAASGSSTQLQGGGSAAMPNGDHHQPHANGANGPSGGV*
This gene is annotated with the following GO terms.
| Gene ID | GO ID |
|---|---|
| Pbr000020.1 | GO:0006355 |
| Pbr000020.1 | GO:0046982 |
| Pbr000020.1 | GO:0005634 |
| Pbr000020.1 | GO:0001228 |
| Pbr000020.1 | GO:0043565 |
| Pbr000020.1 | GO:0016602 |
This gene is annotated with the following KEGG terms.
| KEGG Orthology Accession | KEGG Name | Definition |
|---|---|---|
| K08065 | NFYB|HAP3 | nuclear transcription Y subunit beta |
| Domain Database | Domain Accession | Domain Description |
|---|---|---|
| Gene3D | G3DSA:1.10.20.10 | Histone; subunit A |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| PANTHER | PTHR11064 | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED |
| PANTHER | PTHR11064:SF142 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
| Pfam | PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
| PRINTS | PR00615 | CCAAT-binding transcription factor subunit A signature |
| ProSitePatterns | PS00685 | NF-YB/HAP3 subunit signature. |
| SUPERFAMILY | SSF47113 | Histone-fold |
Arabidopsis thaliana 10 from Tair
| Match protein | Match gene | Identity | E-value | Description |
|---|---|---|---|---|
| AT5G47670.1 | AT5G47670 | 91.509 | 1.04e-66 | nuclear factor Y, subunit B6 |
| AT1G21970.1 | AT1G21970 | 81.373 | 7.43e-59 | Histone superfamily protein |
| AT4G14540.1 | AT4G14540 | 71.134 | 1.01e-49 | nuclear factor Y, subunit B3 |
| AT5G47640.1 | AT5G47640 | 70.833 | 5.39e-48 | nuclear factor Y, subunit B2 |
| AT3G53340.1 | AT3G53340 | 67.708 | 3.54e-46 | nuclear factor Y, subunit B10 |
Malus x domestica GDDH13 v.1 from GDR
| Match protein | Match gene | Identity | E-value |
|---|---|---|---|
| MD05G1361600 | MD05G1361600 | 92.395 | 1.38e-114 |
| MD10G1339000 | MD10G1339000 | 93.789 | 1.22e-94 |
| MD02G1192100 | MD02G1192100 | 87.629 | 7.92e-58 |
| MD02G1191900 | MD02G1191900 | 85.567 | 1.82e-57 |
| MD11G1199300 | MD11G1199300 | 88.506 | 4.99e-52 |
Fragaria vesca Genome v4.0.a2 from GDR
| Match protein | Match gene | Identity | E-value |
|---|---|---|---|
| FvH4_3g00320.t2 | FvH4_3g00320 | 70.000 | 2.11e-72 |
| FvH4_3g00320.t1 | FvH4_3g00320 | 69.325 | 3.28e-72 |
| FvH4_3g11540.t1 | FvH4_3g11540 | 68.153 | 8.71e-66 |
| FvH4_6g40600.t1 | FvH4_6g40600 | 65.138 | 1.22e-50 |
| FvH4_3g29180.t1 | FvH4_3g29180 | 79.167 | 6.48e-50 |